Rapid Diagnosis and Biomedical Research

Providing a clinically supported service for the rapid diagnosis and management of infectious and genetic disease.

2026

Causes of Fever in a Cohort of Nepali Children and the Potential Impact of Molecular Testing During a Dengue Fever Outbreak

Peter J. O’Reilly , MBBCh, DPhil,* Madhav C. Gautam, MSc,† Bhishma Pokhrel, MD,† Sonu Shrestha, MSc,* Meeru Gurung, MD, MPhil,† Sanjeev M. Bijukchhe, MBBS, MSc,† Elizabeth O’Mahony, MBChB, MRCPCH,* Catherine Davis, BSc,‡ Andrew Taylor, BSc, MSc, PhD,‡ Sarah Kelly, MSc,*§ Ruby Basi, BA,† Anushiya Kattel, MBBS,† Kushal Gautam, MBBS,† Shriya Bista, MBBS,† Roshan Jha, MBBS,† Ram Khadka, MBBS,† Saugat Bhandari, MBBS,† Puja Amatya, MD,† Ganesh Shah, MD,† Ira Shrestha, MD,† Michael Carter, MRCPCH, DPhil,¶ Shreekrishna Maharjan, MD,† Colin Fink, MB, ChB, PhD,‡ Michael Levin, PhD, FMedSci,∥ Aubrey J. Cunnington, BMBCh, PhD,∥ Andrew J. Pollard, PhD, FMedSci,*§ and Shrijana Shrestha, MBBS, MD,† on Behalf of the DIAMONDS Consortium

The Pediatric Infectious Disease Journal • 2026

Perinatal transmission of Borrelia burgdorferi: advancing scientific and clinical understanding of Lyme disease in pregnancy

Sue Faber1, Charlotte Mao2*, Elizabeth Darling3, Holly Ahern4, Catherine Brissette5, Tessa D. Gardner6, Janis J. Weis7, Sven Bergström8, Edward B. Breitschwerdt9, Carolyn B. Coyne10, Brian A. Fallon11, Holiday Goodreau12, John S. Lambert13, Vett Lloyd14, Alessandra Luchini15, Sarah B. Mulkey16, Kate Nagel17, Bennett Nemser18, Natalie Rudenko19, Jinyu Shan20,21, Michal Caspi Tal22 and Monica E. Embers23*

Front. Med. 13:1794120. DOI: https://doi.org/10.3389/fmed.2026.1794120

1LymeHope, Burlington, ON, Canada, 2Bay Area Lyme Foundation, Portola Valley, CA, United States, 3Department of Obstetrics and Gynecology, McMaster University, Hamilton, ON, Canada, 4Science Division, State University of New York Adirondack, Queensbury, NY, United States, 5Department of Biomedical Sciences, University of North Dakota, Grand Forks, ND, United States, 6Mercy Hospital, Saint Louis, MO, United States, 7Department of Pathology, Division of Microbiology and Immunology, University of Utah, Salt Lake City, UT, United States, 8Department of Molecular Biology, Umeå University, Umeå, Sweden, 9Department of Clinical Sciences, College of Veterinary Medicine, North Carolina State University, Raleigh, NC, United States, 10Duke University School of Medicine, Durham, NC, United States, 11Department of Psychiatry, Lyme and Tick-borne Diseases Research Center, Columbia University,New York, NY, United States, 12LivLyme Foundation, Denver, CO, United States, 13Rotunda Hospital, Mater Misericordiae University Hospital, University College Dublin, Dublin, Ireland, 14Department of Biology, Mount Allison University, Sackville, NB, Canada, 15School of Systems Biology, George Mason University, Manassas, VA, United States, 16Children’s National Hospital, George Washington University School of Medicine and Health Sciences, Washington, DC, United States, 17LymeLight Foundation, Burlingame, CA, United States, 18Steven & Alexandra Cohen Foundation, Stamford, CT, United States, 19Institute of Parasitology, Biology Center, Czech Academy of Sciences, ˇ Ceské Budˇejovice, Czechia, 20Phelix Research and Development, London, United Kingdom, 21Micropathology Ltd, University of Warwick Science Park, Coventry, United Kingdom, 22Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, United States, 23Department of Microbiology and Immunology, Tulane University Health Sciences, New Orleans, LA, United States

2025

Predicting trajectories of acute illness using RNA velocity of whole blood

Claire Dunican1,2, Clare Wilson1,2, Dominic Habgood-Coote1, Suzanna Paterson1, Mahdad Noursadeghi3, Raymond Moseki46, Cari StekTBC2, Robert Wilkinson1,47,48, Philipp KA Agyeman4, Coco Beudeker5, Giske Biesbroek23, Ulrich von Both6,7, Karen Brengel-Pesce8-10, Enitan D Carrol11,12, Lachlan CoinTBC3, Giselle D’Souza1, Tisham De1, Marieke Emonts13-15, Katy Fidler16, Colin G. Fink17, Michiel van der Flier5,18-20, Ioanna Georgaki21, Laura Kolberg6, Mojca Kolnik22, Taco Kuijpers23-25, Federico Martinón-Torres26,27, Marine Mommert8,9, Samuel Nichols1, Stephane Paulus28,29, Marko Pokorn22,30,31, Andrew J Pollard28,29, Irene Rivero-Calle26,27, Aleksandra Rudzate32,33, Luregn J Schlapbach34,35, Nina Schweintzger36, Ching-Fen Shen37, Shrijana Shrestha38, Chantal Tan39, Maria Tsolia21, Effua Usuf40, Fabian van der Velden13-15, Clementien L. Vermont39,41, Marie Voice17, Shunmay Yeung42,43, Dace Zavadska32,33, Werner Zenz36, Victoria Wright1,2, Mike Levin1,2, Jethro Herberg1,2, on behalf of the PERFORM Consortium*, Rachel PJ Lai1, Graeme Meintjes44, Christopher Chiu1, Mauricio Barahona45, Myrsini Kaforou1,2, Aubrey J Cunnington1,2,†.

1. Department of Infectious Disease, Imperial College referred to Nature Communications – April 2025

A diagnostic host-specific transcriptome response for Mycoplasma pneumoniae pneumonia to guide pediatric patient treatment

Antonio Salas, Sandra Viz-Lasheras, Alberto Gómez-Carballa, Xabier Bello, Irene Rivero Calle, Ana Dacosta-Urbieta, Myrsini Kaforou, Dominic Habgood-Coote, Marieke Emonts, Jethro Herberg, Victoria Wright, Enitan Carrol, Stephane Paulus, Werner Zenz, Daniela Kohlfürst, Nina Schweintzger, Ronald de Groot, Luregn Schlapbach, Philipp Agyeman, Andrew Pollard, Colin Fink, Taco Kuijpers, Suzanne Anderson, Clementien Vermont, Michael Levin#, Federico Martinon-Torres, Michiel Van der Flier, Aubrey Cunnington, Ulrich von Both, Dace Zavadska, Marko Pokorn, María Tsolia, and Henriette Moll

[Paper #NCOMMS-24-45508B]
Article reference: ISCI_ISCIENCE-D-24-02117 Article title:  A 5-transcript signature for discriminating viral and bacterial etiology in pediatric pneumonia

Immunity to Streptococcus pyogenes and Common Respiratory Viruses at Age 0 to 4 Years After COVID-19 Restrictions

Kitt Dokal, MBBS; Samuel Channon-Wells, MMath; Catherine Davis, BSc; Diego Estrada-Rivadeneyra, PhD; Kristin K. Huse, PhD; Amelia Lias, MRes; Shea Hamilton, PhD; Rebecca L. Guy, MSc; Theresa Lamagni, PhD; Sam Nichols, PhD; Andrew Taylor, PhD; Philipp K. A. Agyeman, MD; Amutha Anpananthar, MSc; Romain Basmaci, PhD; Enitan D. Carrol, MD; Michael J. Carter, DPhil; Tisham De, PhD; Marien I. de Jonge, PhD; Marieke Emonts, PhD; Leire Estramiana Elorrieta, MSc; Katy Fidler, PhD; Mojca Kolnik, MD; Taco W. Kuijpers, PhD; Federico Martinon-Torres, PhD; Henriette Moll, PhD; Marine Mommert-Tripon, PhD; Samira Neshat, MD; Maggie Nyirenda-Nyang’wa, PhD; Sean O’Riordan, PhD; Daniel R. Owens, PhD; Nazima Pathan, PhD; Stephane Paulus, MD; Mark J. Peters, PhD; Marko Pokorn, PhD; Andrew J. Pollard, PhD; Irene Rivero-Calle, PhD; Pablo Rojo, PhD; Lorenza Romani, MD; Prita Rughani, MBBS, BSc; Luregn J. Schlapbach, PhD; Nina A. Schweintzger, PhD; Ching-Fen Shen, MD; Artur Sulik, PhD; Maria Tsolia, PhD; Effua Usuf, PhD; Michiel van der Flier, PhD; Clementien Vermont, PhD; Ulrich von Both, MD; Paul Wellman, MRes; Victoria J. Wright, PhD; Shunmay Yeung, PhD; Dace Zavadska, PhD; Aubrey J. Cunnington, PhD; Colin Fink, PhD; Jethro Herberg, PhD; Myrsini Kaforou, PhD; Shiranee Sriskandan, PhD; Michael Levin, PhD; Tom Parks, MD; for the PERFORM and DIAMONDS consortiums

JAMA Network Open. 2025;8(10):e2537808. doi:10.1001/jamanetworkopen.2025.37808

2024

Microbiological culture versus 16S/18S rRNA gene PCR-sanger sequencing for infectious keratitis: a three-arm, diagnostic cross-sectional study

Yasmeen Hammoudeh Yasmeen Hammoudeh 1 Lakshmi Suresh Lakshmi Suresh 1 Zun Zheng Ong Zun Zheng Ong 2 Michelle M. Lister Michelle M. Lister 3 IM Imran Mohammed 4,5 DJ D. John I. Thomas 6 JL Jennifer L. Cottell 6 JM Jennifer M. Holden 6 DG Dalia G. Said 1,5 Harminder S. Dua Harminder S. Dua 1,5 Darren Shu Jeng Ting Darren Shu Jeng Ting 5,7,8*

Front. Med., 12 August 2024 Sec. Ophthalmology Volume 11 – 2024 DOI: https://doi.org/10.3389/fmed.2024.1393832

External validation of a multivariable prediction model for identification of pneumonia and other serious bacterial infections in febrile immunocompromised children

Martin AJ, Van Der Velden FJS, Von Both U, Tsolia MN, Zenz W, Sagmeister M, Vermont C, De Vries G, Kolberg L, Lim E, Pokorn M, Zavadska D, Martinon-Torres F, Rivero-Calle I, Hagedoorn NN, Usuf E, Schlapbach L, Kuijpers TW, Pollard AJ, Yeung S, Fink C, Voice M, Carrol E, Agyeman PKA, Khanijau A, Paulus S, De T, Herberg JA, Levin M, Van Der Flier M, De Groot R, Nijman R, Emonts M

Archives of Disease in Childhood: 2024 Vol: 109: 1 pp: 58-66

Plasma Protein Biomarkers Distinguish Multisystem Inflammatory Syndrome in Children From Other Pediatric Infectious and Inflammatory Diseases

Yeoh S, Estrada-Rivadeneyra D, Jackson H, Keren I, Galassini R, Cooray S, Shah P, Agyeman P, Basmaci R, Carrol E, Emonts M, Fink C, Kuijpers T, Martinon-Torres F, Mommert-Tripon M, Paulus S, Pokorn M, Rojo P, Romani L, Schlapbach L, Schweintzger N, Shen C-F, Tsolia M, Usuf E, van der Flier M, Vermont C, von Both U, Yeung S, Zavadska D, Coin L, Cunnington A, Herberg J, Levin M, Kaforou M, Hamilton S, PERFORM, DIAMONDS and UK KD Genetic Consortia close

2024 Pediatr Infect Dis J
Archives of Disease in Childhood: 2024 Vol: 109: 1 pp: 58-66

Novel finding of vaccine-derived rubella virus-associated granulomata in an adult patient post-allogeneic haematopoietic stem cell transplant

Emily Durity1,2 Jiexin Zheng3 Emilie Sanchez4 Matthew Donati5 Keith Perry6 Jade Derrick6 Andy Taylor7 Colin Fink7 Jennifer Holden7 Paul Grant8 Matt Byott9 William Rickaby10 Nathan Asher10 Stephen L. Walker1,11,12 Kirsty Thomson3 Chris Bunker3,13,14,15

Br J Haematol. 2024;00:1–4

1 Department of Dermatology, University College London Hospitals NHS Foundation Trust, London, UK 2 Department of Dermatology, Guy’s and St Thomas’ NHS Foundation Trust, London, UK 3 University College London Hospitals NHS Foundation Trust, London, UK 4 Department of Virology, Infection Division, University College London Hospitals NHS Foundation Trust, London, UK 5 Specialised Microbiology and Laboratories, South West Regional Laboratory, UK Health Security Agency, Bristol, UK 6 Virus Reference Department, United Kingdom Health Security Agency, London, UK 7 Micropathology Ltd, Coventry, UK 8 Health Services Laboratories, London, UK

2023

Genomic investigations of unexplained acute hepatitis in children

Sofia Morfopoulou, Sarah Buddle, Oscar Enrique Torres Montaguth, Nathaniel Storey, Laura Atkinson, José Afonso Guerra-Assunção, Sunando Roy, Alexander Lennon, Jack C D Lee, Rachel Williams, Charlotte A Williams, Helena Tutill, Nadua Bayzid, Luz Marina Martin Bernal, Catherine Moore, Kate Templeton, Claire Neill, Matt Holden, Priyen Shah, Samantha Coorey, Marie Voice, Michael Steele, Colin Fink, Thomas E Whittaker, Giorgia Santilli, Paul Gissen, Simon N Waddington, Juan Diaz, Thomas S Jacques, Chayarani Kelgeri, Rachel Brown, DIAMONDS and PERFORM consortia, James Hatcher, Surjo De, Glenn Anderson, Eileen Gallagher, Ruth Simmons, Conall Watson, Sema Mandal, Julien Andreani, Peter Simmonds, Maria Zambon, Meera Chand, Luis Campos, Joanne Martin, Emma Thomson, Michael Levin, Ines Ushiro-Lumb, Julianne R Brown, Judith Breuer

Nature volume 617, pages 564–573 (2023)

Relationship between molecular pathogen detection and clinical disease in febrile children across Europe: a multicentre, prospective observational study

Shah P, Voice M, Calvo-Bado L, Rivero-Calle I, Morris S, Nijman R, Broderick C, De T, Eleftheriou I, Galassini R, Khanijau A, Kolberg L, Kolnik M, Rudzate A, Sagmeister MG, Schweintzger NA, Secka F, Thakker C, van der Velden F, Vermont C, Vincek K, Agyeman PKA, Cunnington AJ, De Groot R, Emonts M, Fidler K, Kuijpers TW, Mommert-Tripon M, Brengel-Pesce K, Mallet F, Moll H, Paulus S, Pokorn M, Pollard A, Schlapbach LJ, Shen CF, Tsolia M, Usuf E, van der Flier M, von Both U, Yeung S, Zavadska D, Zenz W, Wright V, Carrol ED, Kaforou M, Martinon-Torres F, Fink C, Levin M, Herberg J;

PERFORM consortium. Lancet Reg Health Eur. 2023 Jul 26;32:100682. DOI: doi: 10.1016/j.lanepe.2023.100682. eCollection 2023 Sep. PMID: 37554664

Febrile illness in high-risk children: a prospective, international observational study

Fabian J S van der Velden, Gabriella de Vries, Alexander Martin, Emma Lim, Ulrich von Both, Laura Kolberg, Enitan D Carrol, Aakash Khanijau, Jethro A Herberg, Tisham De, Rachel Galassini, Taco W Kuijpers, Federico Martinón-Torres, Irene Rivero-Calle, Clementien L Vermont, Nienke N Hagedoorn, Marko Pokorn, Andrew J Pollard, Luregn J Schlapbach, Maria Tsolia, Irini Elefhteriou, Shunmay Yeung, Dace Zavadska, Colin Fink, Marie Voice, Werner Zenz, Benno Kohlmaier, Philipp K A Agyeman, Effua Usuf, Fatou Secka, Ronald de Groot, Michael Levin, Michiel van der Flier, Marieke Emonts; PERFORM consortium

European Journal of Pediatrics, 2023 Feb;182(2):543-554